Reduce GTF

Each organism processed by DEGenome will need a reduced GTF, i.e. a “gen_pos.tsv” file.

The CLI module converts a GTF genome annotation file from GENCODE, Ensembl, or NCBI into a smaller, simpler, and more metadata-rich TSV gene position (“gen_pos”) file. The purpose is to speed up, simplify, and enrich downstream pipelines that require only data on genes, and not e.g. transcripts or exons.