DEGenome – Differential expression across the genome

DEGenome transforms differential gene expression (DGE) data to Ideogram JSON.

Written in Python, the DEGenome pipeline takes in genome annotations and DGE matrices, and outputs Ideogram.js JSON annotation files.

You can then upload Ideogram JSON to the cloud, and explore it in an interactive genome visualization at https://eweitz.github.io/ideogram/differential-expression.

For a walk-through example, see the DEGenome tutorial on Terra.